GENERAL MICROARRAY LINKS
- The R Project for Statistical Computing
Software environment for statistical computing.
Software project for the analysis and comprehension of genomic data generated by wet lab experiments in molecular biology based on R.
- Venn Analysis Tools
Comparision of 2 or 3 gene lists
Aids in functional classification and analysis of your gene list.
Gene Expression Data Analysis - allows classification of genes by pathway, molecular function, or biological process. Allows pathways to be viewed in pictorial form with genes of interest highlighted. Accepts Entrez Gene IDs, Gene Symbols, RefSeq transcript and protein accession numbers.
Visualization of a list of GO terms.
A web-based integrated data mining system. Can organize gene lists by Gene Ontology, tissue expression pattern, chromosome distribution, metabolic and signaling pathways,protein domain information and publications. Accepts most common identifiers.
An Open Source Platform for Complex Network Analysis and Visualization.
- Ingenuity Pathways Analysis
Identifies relationships, mechanisms, functions, and pathways of relevance in data. It also has resources to easily search scientific literature for genes or pathways of interest. A demo account is offered through their website which provides the fully functional software for a limited time.
- STRING DB
Search Tool for the Retrieval of Interacting Genes/Proteins.The interactions include direct (physical) and indirect (functional) associations.