Publications
2024
Resolution of transcription-induced hexasome-nucleosome complexes by Chd1 and FACT.
Engeholm M, Roske JJ, Oberbeckmann E, Dienemann C, Lidschreiber M, Cramer P, Farnung L. Mol Cell. 2024 Sep 19;84(18):3423-3437.e8. doi: 10.1016/j.molcel.2024.08.022. Epub 2024 Sep 12. PMID: 39270644
Three-step mechanism of promoter escape by RNA polymerase II.
Zhan Y, Grabbe F, Oberbeckmann E, Dienemann C, Cramer P. Mol Cell. 2024 May 2;84(9):1699-1710.e6. doi: 10.1016/j.molcel.2024.03.016. Epub 2024 Apr 10. PMID: 38604172
Genome organization across scales: mechanistic insights from in vitro reconstitution studies.
Oberbeckmann E, Oudelaar AM. Biochem Soc Trans. 2024 Apr 24;52(2):793-802. doi: 10.1042/BST20230883. PMID: 38451192
In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization.
Oberbeckmann E, Quililan K, Cramer P, Oudelaar AM. Nat Genet. 2024 Mar;56(3):483-492. doi: 10.1038/s41588-023-01649-8. Epub 2024 Jan 30. PMID: 38291333
A single fiber view of the nucleosome organization in eukaryotic chromatin.
Boltengagen M, Verhagen D, Wolff MR, Oberbeckmann E, Hanke M, Gerland U, Korber P, Mueller-Planitz F. Nucleic Acids Res. 2024 Jan 11;52(1):166-185. doi: 10.1093/nar/gkad1098. PMID: 37994698
2023
ORE-Seq: Genome-Wide Absolute Occupancy Measurement by Restriction Enzyme Accessibilities.
Oberbeckmann E, Wolff MR, Krietenstein N, Heron M, Schmid A, Straub T, Gerland U, Korber P. Methods Mol Biol. 2023;2611:121-152. doi: 10.1007/978-1-0716-2899-7_9. PMID: 36807068
2021
Genome information processing by the INO80 chromatin remodeler positions nucleosomes.
Oberbeckmann E, Krietenstein N, Niebauer V, Wang Y, Schall K, Moldt M, Straub T, Rohs R, Hopfner KP, Korber P, Eustermann S. Nat Commun. 2021 May 28;12(1):3231. doi: 10.1038/s41467-021-23016-z. PMID: 34050142
Ruler elements in chromatin remodelers set nucleosome array spacing and phasing.
Oberbeckmann E, Niebauer V, Watanabe S, Farnung L, Moldt M, Schmid A, Cramer P, Peterson CL, Eustermann S, Hopfner KP, Korber P. Nat Commun. 2021 May 28;12(1):3232. doi: 10.1038/s41467-021-23015-0. PMID: 34050140
2019
Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome.
Oberbeckmann E, Wolff M, Krietenstein N, Heron M, Ellins JL, Schmid A, Krebs S, Blum H, Gerland U, Korber P. Genome Res. 2019 Dec;29(12):1996-2009. doi: 10.1101/gr.253419.119. Epub 2019 Nov 6. PMID: 31694866
2018
The nuclear actin-containing Arp8 module is a linker DNA sensor driving INO80 chromatin remodeling.
Knoll KR, Eustermann S, Niebauer V, Oberbeckmann E, Stoehr G, Schall K, Tosi A, Schwarz M, Buchfellner A, Korber P, Hopfner KP. Nat Struct Mol Biol. 2018 Sep;25(9):823-832. doi: 10.1038/s41594-018-0115-8. Epub 2018 Sep 3. PMID: 30177756